Reference Tracts and Generative Models for Brain White Matter Tractography †

Background: Probabilistic neighborhood tractography aims to automatically segment brain white matter tracts from diffusion magnetic resonance imaging (dMRI) data in different individuals. It uses reference tracts as priors for the shape and length of the tract, and matching models that describe typical deviations from these. We evaluated new reference tracts and matching models derived from dMRI data acquired from 80 healthy volunteers, aged 25–64 years. Methods: The new reference tracts and models were tested in 50 healthy older people, aged 71.8 ± 0.4 years. The matching models were further assessed by sampling and visualizing synthetic tracts derived from them. Results: We found that data-generated reference tracts improved the success rate of automatic white matter tract segmentations. We observed an increased rate of visually acceptable tracts, and decreased variation in quantitative parameters when using this approach. Sampling from the matching models demonstrated their quality, independently of the testing data. Conclusions: We have improved the automatic segmentation of brain white matter tracts, and demonstrated that matching models can be successfully transferred to novel data. In many cases, this will bypass the need for training data and make the use of probabilistic neighborhood tractography in small testing datasets newly practicable

TractoR: Magnetic Resonance Imaging and Tractography with R

Statistical techniques play a major role in contemporary methods for analyzing magnetic resonance imaging (MRI) data. In addition to the central role that classical statistical methods play in research using MRI, statistical modeling and machine learning techniques are key to many modern data analysis pipelines. Applications for these techniques cover a broad spectrum of research, including many preclinical and clinical studies, and in some cases these methods are working their way into widespread routine use.In this manuscript we describe a software tool called TractoR (for “Tractography with R”), a collection of packages for the R language and environment, along with additional infrastructure for straightforwardly performing common image processing tasks. TractoR provides general purpose functions for reading, writing and manipulating MR images, as well as more specific code for fitting signal models to diffusion MRI data and performing tractography, a technique for visualizing neural connectivity

Longitudinal changes of white matter hyperintensities in sporadic small vessel disease: a systematic review and meta-analysis

BACKGROUND AND OBJECTIVES: White matter hyperintensities (WMHs) are frequent imaging features of small vessel disease (SVD) and related to poor clinical outcomes. WMH progression over time is well described, but regression was also noted recently, although the frequency and associated factors are unknown. This systematic review and meta-analysis aims to assess longitudinal intraindividual WMH volume changes in sporadic SVD. METHODS: We searched EMBASE and MEDLINE for articles up to 28 January 2022 on WMH volume changes using MRI on ≥2 time points in adults with sporadic SVD. We classified populations (healthy/community-dwelling, stroke, cognitive, other vascular risk factors, and depression) based on study characteristics. We performed random-effects meta-analyses with Knapp-Hartung adjustment to determine mean WMH volume change (change in milliliters, percentage of intracranial volume [%ICV], or milliliters per year), 95% CI, and prediction intervals (PIs, limits of increase and decrease) using unadjusted data. Risk of bias assessment tool for nonrandomized studies was used to assess risk of bias. We followed Preferred Reporting in Systematic Review and Meta-Analysis guidelines. RESULTS: Forty-one articles, 12,284 participants, met the inclusion criteria. Thirteen articles had low risk of bias across all domains. Mean WMH volume increased over time by 1.74 mL (95% CI 1.23–2.26; PI −1.24 to 4.73 mL; 27 articles, N = 7,411, mean time interval 2.7 years, SD = 1.65); 0.25 %ICV (95% CI 0.14–0.36; PI −0.06 to 0.56; 6 articles, N = 1,071, mean time interval 3.5 years, SD = 1.54); or 0.58 mL/y (95% CI 0.35–0.81; PI −0.26 to 1.41; 8 articles, N = 3,802). In addition, 13 articles specifically mentioned and/or provided data on WMH regression, which occurred in asymptomatic, stroke, and cognitive disorders related to SVD. DISCUSSION: Net mean WMH volume increases over time mask wide-ranging change (e.g., mean increase of 1.75 mL ranging from 1.25 mL decrease to 4.75 mL increase), with regression documented explicitly in up to one-third of participants. More knowledge on underlying mechanisms, associated factors, and clinical correlates is needed, as WMH regression could be an important intervention target

A protocol for precise comparisons of small vessel disease lesions between ex vivo magnetic resonance imaging and histopathology

pp. 310-32La neuroimagen y los estudios clínicos han definido la enfermedad cerebral de los vasos pequeños humanos, pero la fisiopatología sigue siendo relativamente poco comprendida. Para desarrollar terapias eficaces y estrategias preventivas, debemos comprender mejor la heterogeneidad y el desarrollo de la enfermedad de los vasos pequeños a nivel celular.S

Application of the Ordered Logit Model to Optimising Frangi Filter Parameters for Segmentation of Perivascular Spaces

La segmentación de los espacios perivasculares (EVP) de las imágenes de resonancia magnética (RM) del cerebro es importante para comprender el sistema linfático del cerebro y su relación con las enfermedades neurológicas. El filtro Frangi podría ser una herramienta valiosa para este propósito. Sin embargo, sus parámetros deben ajustarse en respuesta a la variabilidad en los parámetros del escáner y los protocolos de estudio. Conociendo las clasificaciones neurorradiológicas del PVS, utilizamos el modelo logit ordenado para optimizar los parámetros del filtro Frangi. El volumen de PVS obtenido se correlacionó de manera significativa y fuerte con las evaluaciones neurorradiológicas (ρ = 0.75, p <0.001 de Spearman), lo que sugiere que el modelo logit ordenado podría ser una buena alternativa a los marcos de optimización convencionales para segmentar PVS en MRI

Fluctuating asymmetry in brain structure and general intelligence in 73-Year-olds

SRC, MEB, JMW, IJD were supported by MRC grants MR/M013111/1 and MR/R024065/1. IJD is additionally supported by the Dementias Platform UK (MR/L015382/1), and he, SRC and SJR by the Age UK-funded Disconnected Mind project (http://www.disconnectedmind.ed.ac.uk). The work was done within the University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology; it was funded by the MRC and the BBSRC (MR/K026992/1) and supported SJR, IJD, and JMS. SRC, SJR, MEB and IJD were supported by a National Institutes of Health (NIH) research grant R01AG054628. JMW was supported by the Scottish Imaging Network: A Platform for Scientific Excellence (SINAPSE) collaboration (http://www.sinapse.ac.uk).Fluctuating body asymmetry is theorized to indicate developmental instability, and to have small positive associations with low socioeconomic status (SES). Previous studies have reported small negative associations between fluctuating body asymmetry and cognitive functioning, but relationships between fluctuating brain asymmetry and cognitive functioning remain unclear. The present study investigated the association between general intelligence (a latent factor derived from a factor analysis on 13 cognitive tests) and the fluctuating asymmetry of four structural measures of brain hemispheric asymmetry: cortical surface area, cortical volume, cortical thickness, and white matter fractional anisotropy. The sample comprised members of the Lothian Birth Cohort 1936 (LBC1936, N = 636, mean age = 72.9 years). Two methods were used to calculate structural hemispheric asymmetry: in the first method, regions contributed equally to the overall asymmetry score; in the second method, regions contributed proportionally to their size. When regions contributed equally, cortical thickness asymmetry was negatively associated with general intelligence (beta=-0.18,p <.001). There was no association between cortical thickness asymmetry and childhood SES, suggesting that other mechanisms are involved in the thickness asymmetry-intelligence association. Across all cortical metrics, asymmetry of regions identified by the parieto-frontal integration theory (P-FIT) was not more strongly associated with general intelligence than non-P-FIT asymmetry. When regions contributed proportionally, there were no associations between general intelligence and any of the asymmetry measures. The implications of these findings, and of different methods of calculating structural hemispheric asymmetry, are discussed.Publisher PDFPeer reviewe

Birth weight is associated with brain tissue volumes seven decades later but not with MRI markers of brain ageing

Birth weight, an indicator of fetal growth, is associated with cognitive outcomes in early life (which are predictive of cognitive ability in later life) and risk of metabolic and cardiovascular disease across the life course. Brain health in older age, indexed by MRI features, is associated with cognitive performance, but little is known about how variation in normal birth weight impacts on brain structure in later life. In a community dwelling cohort of participants in their early seventies we tested the hypothesis that birth weight is associated with the following MRI features: total brain (TB), grey matter (GM) and normal appearing white matter (NAWM) volumes; whiter matter hyperintensity (WMH) volume; a general factor of fractional anisotropy (gFA) and peak width skeletonised mean diffusivity (PSMD) across the white matter skeleton. We also investigated the associations of birth weight with cortical surface area, volume and thickness. Birth weight was positively associated with TB, GM and NAWM volumes in later life (β ≥ 0.194), and with regional cortical surface area but not gFA, PSMD, WMH volume, or cortical volume or thickness. These positive relationships appear to be explained by larger intracranial volume, rather than by age-related tissue atrophy, and are independent of body height and weight in adulthood. This suggests that larger birth weight is linked to more brain tissue reserve in older life, rather than age-related brain structural features, such as tissue atrophy or WMH volume

Application of the ordered logit model to optimising Frangi filter parameters for segmentation of perivascular spaces

AbstractSegmentation of perivascular spaces (PVS) from brain magnetic resonance images (MRI) is important for understanding the brain's lymphatic system and its relationship with neurological diseases. The Frangi filter might be a valuable tool for this purpose. However, its parameters need to be adjusted in response to the variability in the scanner's parameters and study protocols. Knowing the neuroradiological ratings of the PVS, we used the ordered logit model to optimise Frangi filter parameters. The PVS volume obtained significantly and strongly correlated with neuroradiological assessments (Spearman's ρ=0.75, p < 0.001), suggesting that the ordered logit model could be a good alternative to conventional optimisation frameworks for segmenting PVS on MRI